Datasets and resources

FANS workflow

Nuclei isolation protocol for omics interrogation of multiple brain cell types.  

  • Nott*,§, A., Schlachetzki*,§, J.C.M., Fixsen, B.R., Glass§, C.K. (2021) Nat Protoc. 366(6469):1134-1139.

  • A full-text view-only version of the protocol is accessible with the following SharedIt link
AD risk association

Brain cell type-specific enhancer-promoter interactome maps and disease-risk association.  

  • Nott*, A., Holtman*, I.R., Coufal*, N.G., et al. (2019) Science 366(6469):1134-1139.

  • Visualization of ATAC-seq, ChIP-seq, and PLAC-seq datasets is available as a UCSC genome browser session
  • ATAC-seq, ChIP-seq, and PLAC-seq sequencing datasets (fastq files) are available through dbGap
  • Processed ATAC-seq and ChIP-seq peak files for each brain cell type are available on gitHub